supfam.org

SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms

SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms. Protein annotations are based on a library of Hidden Markov Models built from the expertly curated SCOP Structural Classification of Proteins database.
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SUPFAM.ORG HISTORY

This web site supfam.org was registered on May 16, 2001. It is currently one thousand two hundred and fifty-eight weeks, nine days, nine hours, and thirty-two minutes old.
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2001

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LINKS TO WEB SITE

ExPASy - PROSITE

Database of protein domains, families and functional sites. PROSITE is complemented by ProRule.

DBD Transcription factor database Home

DBD is a database of predicted transcription factors in completely sequenced genomes. The predicted transcription factors all contain assignments to sequence specific DNA-binding domain families. The predictions are based on domain assignments from the SUPERFAMILY. Benchmarks of our transcription factor predictions show they are accurate and have wide coverage on a genomic scale.

Genome3D Home

Search Genome3D find structural annotations for your proteins. Genome3D provides consensus structural annotations and 3D models for sequences from model organisms, including human. In addition Genome3D integrates structural classification data from SCOP. Genome3D is currently funded by the. Take a look around the site with these example pages. Find out more about Genome3D.

Home Human Phenotype Ontology

HPO release - September 2016. HPO release - July 2016. Translations of HPO into multiple languages. HPO release - April 2016.

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CONTACTS

Julian Gough

Julian Gough

College Franco-Britannique

Paris, 75014

FR

33.158104128
gough@pasteur.fr

Julian Gough

Julian Gough

2-10-3-520 Tsurumicho Tsurumiku

Yokohama, JP, 230-0051

JP

81.1223740705
gough@gsc.riken.jp

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PAGE TITLE

SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms

DESCRIPTION

SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms. Protein annotations are based on a library of Hidden Markov Models built from the expertly curated SCOP Structural Classification of Proteins database.

CONTENT

This web site supfam.org had the following on the web site, "SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes." We noticed that the website said " The SUPERFAMILY annotation is based on a collection of hidden Markov models." It also said " Which represent structural protein domains at the SCOP. A superfamily groups together domains which have an evolutionary relationship. The annotation is produced by scanning protein sequences from over 2,478 completely sequenced genomes. Against the hidden Markov models. Submit sequences for SCOP classification."

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